miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|110879901|gb|DY301124.1|DY301124 GTTCTCCATTAATGTATACCATGTGTTTGAATGATGGTGAGACCTAAACTGGTGCAAATCATAGTCACATGATATAAATT
TTGACCTTGTACTATGTAGCGTTATAACGTTCAATCATGGCGACGGAGGTGATGGATCTTCCTCGAAGAACTTGACATGT
TTAAACGTTGCATTAAAGTTCTTTAAGATTTTCTTGATTTACATAAGACAAAGGATTTTAGTTAACTAGTTTTATGCTTT
TAACTTTGGAGCAGTAATTACTAGGAAGTCTTTTCTGCTGTTTTGTTGATAAACATTTTCTTGCACTTGGTTTTTACTAC
GTTCTTTTGAGTTTTGAGAAAGAGAAAAAATTTAGTGAGTTGTTTATTCTGAGTGTGAAGTTAGATAAAGTTAATTACTT
TGATTGATTAACTTCACAGAATGTTGCCTATTAATTTAGACAGCCAATAACAATCAATGATTTATATTTTTGCTTGGTGC
AGAAATAAGGGAATAAGTTTTGTTGCCATTGATCAGAACAGGCCACTGTCAGATCAAGGGCCTTTTGATGTTGTCTTGCA
CAAGTTGTCAGGAATGGAGTGGTGCGAGATCATTGAGGATTACAGGCAGAAACATCCAGAAGTTACCATCCTTGATCCAC
CAGATGCAATTAAACATCTACACAATCGACAGTCCATGCTTCAAGATGTGGCAGATCTTAACTTGTCTGACTGCAATGGC
AAGGTTCGTGTTCCTAGGCAAATGGTCATAACAAAAGATTCATTATCAATCCCTGATCAAGTTTTTGAAGCTGGGCCAAA
ATTGCCACTTGTCGCAAAGCCTCTTGTAGTGGATGGAAATGGTAATTCCCACCAAACTTTTTTCTGCTTATGAAAAATTT
CTCCCTTTCCAAACTTGGAACTCCCATGGTTTCAAAAAAAGTTTGAAAATCTGGGAGGGCTTTCTCTTAAAAATTAAATT
TAATTGGGAAAAAAAAAAGGGTATTAAGGCGGTTTTCTCCTCCCAATGGTCCCCCAAAGGGAGCCACCAAAAATTTTTCG
GGGGGTCTCCTTTTTTCCCCGGGTTTACTTGGCGCGCGCGCCCCTCCCAAAAGAAAGCAAAAACTTGGCACTGGGGTTTA
TTCCAAAAAATTTCTCCCCCCCCCCCCCCGCCGGAGGAAAGCAGTTGAAGAGGGGGACACTCCCCCCCCCACCCGGGTGG
AGCACCTTCGATAATTTTTTATTTAATAATTCTACAAAACTGCACACCAAAG




Most similar to sp|Q9SUG3|ITPK2_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9SUG3|ITPK2_ARATH Inositol-tetrakisphosphate 1-kinase 2
            OS=Arabidopsis thaliana GN=ITPK2 PE=2 SV=2
          Length = 353

 Score =  184 bits (468), Expect = 9e-46
 Identities = 112/232 (48%), Positives = 139/232 (59%)
 Frame = +1

Query: 481  RNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCEIIEDYRQKHPEVTILDPPDAIKHL 660
            RNKGI FVAIDQN+PLS+QGPFD+VLHK  G EW  I+E++R  HP+VT+LDPPDAI HL
Sbjct: 65   RNKGILFVAIDQNKPLSEQGPFDIVLHKQIGKEWRRILEEFRLAHPDVTVLDPPDAILHL 124

Query: 661  HNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGPKLPLVAKPLVVDGN 840
             NRQSMLQ VAD+NLSD NG+V VP+Q+VI KD+ SIP+ V  AG +LPLVAKPLV DG+
Sbjct: 125  RNRQSMLQCVADMNLSDSNGRVGVPKQLVIKKDASSIPEAVNNAGLRLPLVAKPLVADGS 184

Query: 841  GNSHQTFFCL*KISPFPNLELPWFQKKFENXXXXXXXXXXXXXXXXXXXXXXXXPMVPQR 1020
              SH+      + S    LE P   ++F N                        P V +R
Sbjct: 185  AKSHELSLAYDQHS-LLKLEPPLVLQEFVN-HGGVLFKVYIVGEAIRVVRRFSLPDVSRR 242

Query: 1021 EPPKIFRGVSFFPRVYLARAPLPKESKNLALGFIPKNFSPPPPAGGKQLKRG 1176
            E PK   GV  FPRV  A A       + ++  +P    P      K+L+RG
Sbjct: 243  ELPK-SAGVFRFPRVSCAAASADDADLDPSIAELPPR--PLLERLAKELRRG 291